Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6210735_6214457_R

Intron Information:

Intron Rank:

148338

Intron Class:

major

Intron Phase:

Intron Coordinates:

6210735 - 6214457

Intron Length:

3723

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGGCTT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCCCACCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

CTTTTCCCACCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

73.4

43.3

Major BPS

72.7

0.56

30.1

Major PPT

77.9

0.63

0.8

71.3

34.5

Minor 5ss

36.2

-1.6

3.5

48.3

47.3

Minor BPS

46.2

-0.2

2.1

63.62

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027184

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041381

6210458 - 6239169

28712

ENSAPLT00000025817

6210458 - 6236655

26198