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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6221853_6239075_R

Intron Information:

Intron Rank:
148342
Intron Class:
major
Intron Phase:
Intron Coordinates:
6221853 - 6239075
Intron Length:
17223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGACAA
U12 Branch Point Sequence:
CTTGGTTTACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
50.6
0.02
1.2
59
38
Major PPT
82.6
0.73
0.7
79.8
25.5
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
45.6
-0.3
2.1
56.67
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027184
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033602
6221521 - 6244105
22585