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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6224761_6234533_R

Intron Information:

Intron Rank:
148340
Intron Class:
major
Intron Phase:
Intron Coordinates:
6224761 - 6234533
Intron Length:
9773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TGTGATATATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
78.8
29.6
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
91.3
0.93
0.6
89.3
19.5
Minor 5ss
32.9
-2
2.9
40.3
45.4
Minor BPS
44.7
-0.3
2
66.49
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027184
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025817
6210458 - 6236655
26198
ENSAPLT00000041381
6210458 - 6239169
28712