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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6228410_6232204_F

Intron Information:

Intron Rank:
148092
Intron Class:
major
Intron Phase:
Intron Coordinates:
6228410 - 6232204
Intron Length:
3795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATCCTTCTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTTCATTGATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
80.4
27.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
72
0.5
1
65.6
40.4
Minor 5ss
41.7
-0.9
3
57.1
40.8
Minor BPS
65.6
0.47
1.6
74.7
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029730
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031513
6225708 - 6232819
7112