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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6239198_6244055_R

Intron Information:

Intron Rank:
148343
Intron Class:
major
Intron Phase:
Intron Coordinates:
6239198 - 6244055
Intron Length:
4858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
ATAAATTCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TGTTCTGCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
71.5
0.48
1
67
43.8
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
49.5
-0
2.2
67.99
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027184
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033602
6221521 - 6244105
22585