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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6250873_6252888_R

Intron Information:

Intron Rank:
148336
Intron Class:
major
Intron Phase:
Intron Coordinates:
6250873 - 6252888
Intron Length:
2016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
GTGACTTGATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
75
0.62
1
65.3
41.5
Major PPT
73.9
0.54
1
65.7
44.6
Minor 5ss
32.4
-2
3
40.7
45.5
Minor BPS
48.8
-0
1.8
66.39
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027184
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017498
6244126 - 6256547
12422