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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6274800_6334806_R

Intron Information:

Intron Rank:
131286
Intron Class:
major
Intron Phase:
Intron Coordinates:
6274800 - 6334806
Intron Length:
60007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTGCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
88.7
0.87
0.7
81.4
36
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
64.7
0.55
1.7
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017848
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035910
6273616 - 6352379
78764
ENSAPLT00000026685
6273616 - 6370885
97270