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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6595726_6598876_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6595726 - 6598876
Intron Length:
3151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
TTTTGCTTAGAG
Flanking Amino Acid:
EKEFRNKQTNVMGSQGDLSA
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
80
34.8
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
86.7
0.83
0.7
84.4
30.6
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
53.9
-0
2.2
68.73
44.4

Associated Gene:

Gene:
ATP6V1G3
Ensembl Gene ID:
ENSAPLG00000008690
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009043
6588220 - 6599323
11104