Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_666746_680154_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

666746 - 680154

Intron Length:

13409

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTT|GTAAGTCCA

5'SS Class:

major

3'SS Sequence:

TATCTTTCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTATATTAAAA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

1.1

66.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

81.9

0.72

0.7

77.8

30.6

Minor 5ss

37.1

-1.5

2.9

48.7

41.1

Minor BPS

60.2

0.32

1.7

74.64

36.1

Associated Gene:

Gene:

TGFBR3

Ensembl Gene ID:

ENSAPLG00000014247

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035945

555729 - 680318

124590

ENSAPLT00000014882

559197 - 680502

121306