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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6676544_6683340_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6676544 - 6683340
Intron Length:
6797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
GTATTTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCAAA
Flanking Amino Acid:
SSKTTAAHSLVGTPYYMSPE
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
100
1.24
0.5
100
0
Major PPT
80
0.68
0.9
74.2
40
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
57.3
0.22
2.1
78.09
38.1

Associated Gene:

Gene:
NEK7
Ensembl Gene ID:
ENSAPLG00000022812
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029816
6662500 - 6723980
61481