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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6699853_6709125_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6699853 - 6709125
Intron Length:
9273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGTGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTTTTTTAATC
Flanking Amino Acid:
GVPVALKKVQIFDLMDAKAR
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72.6
0.51
0.9
68.5
37.3
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
74.8
0.76
1.1
77
33.7

Associated Gene:

Gene:
NEK7
Ensembl Gene ID:
ENSAPLG00000022812
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029816
6662500 - 6723980
61481