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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6709267_6712195_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6709267 - 6712195
Intron Length:
2929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTCTTTCTAACA
Flanking Amino Acid:
GPTAPPFQPQKALRPDMGYN
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
74.4
0.55
0.9
66
39.6
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
63.8
0.43
1.6
75.11
36.7

Associated Gene:

Gene:
NEK7
Ensembl Gene ID:
ENSAPLG00000022812
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029816
6662500 - 6723980
61481