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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6712281_6722881_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6712281 - 6722881
Intron Length:
10601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCAGTG
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
AGTGTAATGACT
Flanking Amino Acid:
GLIQESLLIPRTEGTLLLDR
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
60.8
44.4
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
92.7
0.96
0.6
91.8
19.2
Minor 5ss
38.2
-1.3
3.7
55.2
49
Minor BPS
45
-0.3
1.9
63.95
40

Associated Gene:

Gene:
NEK7
Ensembl Gene ID:
ENSAPLG00000022812
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029816
6662500 - 6723980
61481