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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6777463_6782201_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6777463 - 6782201
Intron Length:
4739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAAAC
5'SS Class:
major
3'SS Sequence:
GTTCATTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGGCCACTAACT
Flanking Amino Acid:
LGVDIVNYNSGCNENEADHL
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
71.2
34.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
69.4
0.44
1
61.3
44.3
Minor 5ss
26.9
-2.6
3
33.2
42.3
Minor BPS
50.8
0.1
2
72.86
43

Associated Gene:

Gene:
LHX9
Ensembl Gene ID:
ENSAPLG00000008320
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028796
6772572 - 6784122
11551
ENSAPLT00000008673
6775653 - 6785049
9397
ENSAPLT00000045715
6775653 - 6789815
14163
ENSAPLT00000034452
6775653 - 6784122
8470