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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6782558_6783140_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6782558 - 6783140
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCAA
5'SS Class:
major
3'SS Sequence:
CCGTTTCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTGAT
U12 Branch Point Sequence:
GCCTCGTTGATG
Flanking Amino Acid:
GSIYCKEDYYRRFSVQRCAR
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
59.3
41.3
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
75.3
0.57
0.8
72.9
32
Minor 5ss
28.3
-2.5
3.5
38
46.9
Minor BPS
47.4
-0.3
2.1
50.43
44.5

Associated Gene:

Gene:
LHX9
Ensembl Gene ID:
ENSAPLG00000008320
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045715
6775653 - 6789815
14163
ENSAPLT00000034452
6775653 - 6784122
8470
ENSAPLT00000028796
6772572 - 6784122
11551
ENSAPLT00000008673
6775653 - 6785049
9397