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Intron Name: Anas_platyrhynchos_platyrhynchos_8_6784860_6789352_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

6784860 - 6789352

Intron Length:

4493

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGATCC

5'SS Class:

strong_major

3'SS Sequence:

TTCCGTCCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGAAAAT

U12 Branch Point Sequence:

AAGAAAATACTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.9

0.96

0.8

78.6

29.6

Major BPS

48.6

-0

1.2

53.4

38.7

Major PPT

74.1

0.54

0.8

65.4

36.2

Minor 5ss

39.2

-1.2

51.6

45.1

Minor BPS

-0.9

1.9

47.81

37.9

Associated Gene:

Gene:

LHX9

Ensembl Gene ID:

ENSAPLG00000008320

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045715

6775653 - 6789815

14163