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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6792121_6792728_R

Intron Information:

Intron Rank:
143624
Intron Class:
major
Intron Phase:
Intron Coordinates:
6792121 - 6792728
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGAGCA
5'SS Class:
major
3'SS Sequence:
ATTTCTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GCTTGTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
64.8
35.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
86.8
0.83
0.7
81.7
29.5
Minor 5ss
24.8
-2.9
3
22.4
37
Minor BPS
48.1
-0
2.1
67.55
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024605
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022601
6791872 - 6793840
1969