Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_683977_685990_R

Intron Information:

Intron Rank:

143736

Intron Class:

major

Intron Phase:

Intron Coordinates:

683977 - 685990

Intron Length:

2014

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGACCA

5'SS Class:

strong_major

3'SS Sequence:

CCTATTTGACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

GCCTATTTGACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.74

38.2

Major BPS

90.4

0.7

90.2

19.3

Major PPT

63.8

0.31

58.4

41.8

Minor 5ss

32.4

-2

37.8

40.6

Minor BPS

56.9

0.3

1.5

68.36

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024631

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033427

682256 - 704052

21797