Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_686699_704039_R

Intron Information:

Intron Rank:

143738

Intron Class:

major

Intron Phase:

Intron Coordinates:

686699 - 704039

Intron Length:

17341

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAATGTTC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCAA

U12 Branch Point Sequence:

CTTTCAACAGCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.73

75.8

34.6

Major BPS

78.4

0.71

0.9

81.3

29.8

Major PPT

100

1.12

0.4

100

Minor 5ss

41.4

-1

3.3

58.9

45.9

Minor BPS

43.7

-0.4

2.2

62.21

43.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024631

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033427

682256 - 704052

21797