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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6875411_6886562_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6875411 - 6886562
Intron Length:
11152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTTAGTTTC
5'SS Class:
major
3'SS Sequence:
CTTGTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATTCCTTTTACT
Flanking Amino Acid:
LCIASKLCQAEVLNSVPKFC
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.2
0.33
1.3
67.7
38.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83
0.74
0.9
76.4
36.7
Minor 5ss
44
-0.6
2.8
64.5
39.5
Minor BPS
68
0.65
1.6
84.03
36.2

Associated Gene:

Gene:
DENND1B
Ensembl Gene ID:
ENSAPLG00000007867
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045231
6875141 - 6980765
105625