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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6886613_6894530_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6886613 - 6894530
Intron Length:
7918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTAATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTCTTACACT
Flanking Amino Acid:
PKFCFPFDIERVSQNQVGQH
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
77.9
36.9
Major BPS
100
1.24
0.5
100
0
Major PPT
83.5
0.75
0.8
80.6
36.5
Minor 5ss
40.5
-1.1
3.2
58.3
46.4
Minor BPS
56.8
0.3
2.1
80.14
42.2

Associated Gene:

Gene:
DENND1B
Ensembl Gene ID:
ENSAPLG00000007867
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037961
6824963 - 6980765
155803
ENSAPLT00000008219
6829902 - 6980765
150864
ENSAPLT00000048510
6829902 - 6980765
150864
ENSAPLT00000045231
6875141 - 6980765
105625