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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6894651_6902541_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6894651 - 6902541
Intron Length:
7891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATTTACTCAAAT
Flanking Amino Acid:
SGGKVCLCILSYLPWFEVYY
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94
1.04
0.8
78.8
38.3
Major BPS
80
0.75
1
78.6
31
Major PPT
82.7
0.74
0.7
81
24.1
Minor 5ss
39.6
-1.2
2.8
49.7
46.6
Minor BPS
60.8
0.42
1.8
81.75
38.8

Associated Gene:

Gene:
DENND1B
Ensembl Gene ID:
ENSAPLG00000007867
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045231
6875141 - 6980765
105625
ENSAPLT00000037961
6824963 - 6980765
155803
ENSAPLT00000008219
6829902 - 6980765
150864
ENSAPLT00000048510
6829902 - 6980765
150864