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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6903900_6908180_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6903900 - 6908180
Intron Length:
4281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCCCATTGATTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AAATTATTAATT
Flanking Amino Acid:
KANALVSLSVHSYFITPDIT
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
58.3
0.19
1
57.8
36.9
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
61.5
0.44
1.5
73.6
36.8

Associated Gene:

Gene:
DENND1B
Ensembl Gene ID:
ENSAPLG00000007867
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008219
6829902 - 6980765
150864