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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6906333_6908180_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6906333 - 6908180
Intron Length:
1848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CCCCATTGATTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AAATTATTAATT
Flanking Amino Acid:
VLKKEPCLVSHSYFITPDIT
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.5
29.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
58.3
0.19
1
57.8
36.9
Minor 5ss
38.8
-1.3
2.9
49.9
46.4
Minor BPS
61.5
0.44
1.5
73.6
36.8

Associated Gene:

Gene:
DENND1B
Ensembl Gene ID:
ENSAPLG00000007867
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037961
6824963 - 6980765
155803
ENSAPLT00000048510
6829902 - 6980765
150864
ENSAPLT00000045231
6875141 - 6980765
105625