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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6908235_6910991_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6908235 - 6910991
Intron Length:
2757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTATTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTATTTTAACA
Flanking Amino Acid:
ITGLPTIPESRNLTEYFVAV
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.3
72.7
44.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84.3
0.77
0.9
81.1
35.2
Minor 5ss
40.3
-1.1
2.8
47
41.7
Minor BPS
77.6
0.86
1.1
83.48
30.3

Associated Gene:

Gene:
DENND1B
Ensembl Gene ID:
ENSAPLG00000007867
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008219
6829902 - 6980765
150864
ENSAPLT00000048510
6829902 - 6980765
150864
ENSAPLT00000045231
6875141 - 6980765
105625
ENSAPLT00000037961
6824963 - 6980765
155803