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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6930222_6931734_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6930222 - 6931734
Intron Length:
1513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TTTTCCACTATT
Flanking Amino Acid:
LIGVHLSLIERVKNRSLEDV
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
89.1
0.88
0.6
84.1
24.1
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
52.4
0.16
2.1
81.66
39.6

Associated Gene:

Gene:
DENND1B
Ensembl Gene ID:
ENSAPLG00000007867
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048510
6829902 - 6980765
150864
ENSAPLT00000045231
6875141 - 6980765
105625
ENSAPLT00000037961
6824963 - 6980765
155803
ENSAPLT00000008219
6829902 - 6980765
150864