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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6950189_6956154_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6950189 - 6956154
Intron Length:
5966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
AAAGTGTGACTT
Flanking Amino Acid:
TAVNLQLFKQFIDGRLSKLN
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
73.4
37.3
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
96.3
1.04
0.5
95.7
14.9
Minor 5ss
38.9
-1.2
2.8
48
47.7
Minor BPS
37
-0.9
2.1
48.36
38.7

Associated Gene:

Gene:
DENND1B
Ensembl Gene ID:
ENSAPLG00000007867
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048510
6829902 - 6980765
150864
ENSAPLT00000045231
6875141 - 6980765
105625
ENSAPLT00000037961
6824963 - 6980765
155803
ENSAPLT00000008219
6829902 - 6980765
150864