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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6959248_6960119_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6959248 - 6960119
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAATA
5'SS Class:
major
3'SS Sequence:
TTGTACATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TAAATCTTACTA
Flanking Amino Acid:
SYQQWMDTVKKGGAMINTAM
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
75.8
33.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.4
0.62
0.9
70.8
39.4
Minor 5ss
42.5
-0.8
3
57.4
46.9
Minor BPS
53.2
0.1
1.6
61.7
38.5

Associated Gene:

Gene:
DENND1B
Ensembl Gene ID:
ENSAPLG00000007867
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008219
6829902 - 6980765
150864
ENSAPLT00000048510
6829902 - 6980765
150864
ENSAPLT00000045231
6875141 - 6980765
105625
ENSAPLT00000037961
6824963 - 6980765
155803