About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6962754_6963553_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6962754 - 6963553
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AGAAATTTAAAT
Flanking Amino Acid:
QEVRSKLKHKESEEEYGTCS
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.5
35.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
75.7
0.58
0.9
72.4
37.8
Minor 5ss
43.5
-0.7
2.6
60.2
44.3
Minor BPS
49.4
0.03
1.6
63.7
39.6

Associated Gene:

Gene:
DENND1B
Ensembl Gene ID:
ENSAPLG00000007867
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045231
6875141 - 6980765
105625
ENSAPLT00000037961
6824963 - 6980765
155803
ENSAPLT00000008219
6829902 - 6980765
150864
ENSAPLT00000048510
6829902 - 6980765
150864