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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6999093_7019986_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6999093 - 7019986
Intron Length:
20894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGCGAC
5'SS Class:
major
3'SS Sequence:
TCGATCCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
TTGACATAAATT
Flanking Amino Acid:
NYAGDRCEIDLTTDLISNIF
Intron Amino Acid Position:
1339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
68.8
36.5
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
75.4
0.57
0.9
65.8
40.8
Minor 5ss
39.1
-1.2
3.4
54.3
43.5
Minor BPS
51.8
0.14
2
73.75
43.3

Associated Gene:

Gene:
CRB1
Ensembl Gene ID:
ENSAPLG00000007783
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008089
6998877 - 7096457
97581