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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7025037_7028044_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7025037 - 7028044
Intron Length:
3008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAGGTACA
5'SS Class:
major
3'SS Sequence:
TATCTTTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GGTTTTTCAATT
Flanking Amino Acid:
QCQLVHQGFECLANAVFSGR
Intron Amino Acid Position:
951

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.1
73.6
37
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.3
0.59
0.9
72
37.7
Minor 5ss
37.1
-1.5
3
47.4
41.4
Minor BPS
59.7
0.38
1.5
73.19
38

Associated Gene:

Gene:
CRB1
Ensembl Gene ID:
ENSAPLG00000007783
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008089
6998877 - 7096457
97581