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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7028211_7028588_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7028211 - 7028588
Intron Length:
378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAG
U12 Branch Point Sequence:
ATTTACTCAGGT
Flanking Amino Acid:
RGCMGDNLCKSNPCHNGGVC
Intron Amino Acid Position:
896

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.5
40.6
Major BPS
63.2
0.33
1.5
71.6
36.4
Major PPT
78
0.63
0.7
73.3
25.1
Minor 5ss
32.9
-2
2.9
40.4
45.3
Minor BPS
47
-0.1
2.2
72.02
44.4

Associated Gene:

Gene:
CRB1
Ensembl Gene ID:
ENSAPLG00000007783
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008089
6998877 - 7096457
97581