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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7056889_7057942_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7056889 - 7057942
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AACAATTAAACC
Flanking Amino Acid:
ADSYTCHCWPGYTGARCETD
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
83.9
0.76
0.8
77
37.2
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
45.5
-0.3
1.8
51.45
39.4

Associated Gene:

Gene:
CRB1
Ensembl Gene ID:
ENSAPLG00000007783
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008089
6998877 - 7096457
97581