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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7060386_7066827_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7060386 - 7066827
Intron Length:
6442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTAAG
U12 Branch Point Sequence:
CTTTCTTTGCCT
Flanking Amino Acid:
YDCICPLGYTGTNCELEIDE
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
47.2
-0.1
1.6
53
41.4
Major PPT
79
0.65
0.8
73.6
31.4
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
48.6
-0
3.5
82.48
39.6

Associated Gene:

Gene:
CRB1
Ensembl Gene ID:
ENSAPLG00000007783
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008089
6998877 - 7096457
97581