About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7117736_7120369_F


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
7117736 - 7120369

Intron Length:
2634

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAT|GTAAGTATT

5'SS Class:
strong_major

3'SS Sequence:
GTTATCATTTTAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTATCAT

U12 Branch Point Sequence:
GTATCTTTGACG

Flanking Amino Acid:
KTKSEGWKCDICKKSFTRRP

Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
88
0.9
0.9
92.9
22.2

Major BPS
88.2
0.95
0.9
88.3
28.5

Major PPT
74.4
0.55
0.9
71.3
39.4

Minor 5ss
44.1
-0.6
2.9
65.1
39.1

Minor BPS
69.3
0.46
1.3
68.05
39.6

Associated Gene:

Gene:
ZBTB41

Ensembl Gene ID:

Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

7113899 - 7127544
13646

7113899 - 7127544
13646