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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_712544_714175_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
712544 - 714175
Intron Length:
1632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TTAAAATAACCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGTTTTAAAA
Flanking Amino Acid:
KGKRKGKSSEETQQPNPRIS
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
57.8
0.18
1.1
49.5
46.9
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
66.3
0.51
1.5
75.65
35.9

Associated Gene:

Gene:
BRDT
Ensembl Gene ID:
ENSAPLG00000014456
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015077
705153 - 730839
25687