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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7126168_7126900_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7126168 - 7126900
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCATCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATAACTTTAAAT
Flanking Amino Acid:
SLEMHFRTHSGEKPYKCQIC
Intron Amino Acid Position:
692

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
74.1
0.54
0.9
65.7
40.9
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
66.3
0.59
1.4
77.7
38

Associated Gene:

Gene:
ZBTB41
Ensembl Gene ID:
ENSAPLG00000007731
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043683
7113899 - 7127544
13646
ENSAPLT00000008030
7113899 - 7127544
13646