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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7133863_7134643_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7133863 - 7134643
Intron Length:
781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGC
5'SS Class:
major
3'SS Sequence:
TTCTCTCCATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATGTATTAAAC
Flanking Amino Acid:
SIGCRRFSLQSGQTISVSVT
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
56.6
42.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
74.8
0.56
0.8
75.2
28.5
Minor 5ss
34
-1.8
3.8
50.3
46.3
Minor BPS
52.8
0.07
1.8
65.77
39.3

Associated Gene:

Gene:
ASPM
Ensembl Gene ID:
ENSAPLG00000007025
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007340
7133347 - 7160083
26737