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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7141355_7141505_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7141355 - 7141505
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TTTTGCTAGATG
Flanking Amino Acid:
RRDRHLWKDVGERQKVLNWL
Intron Amino Acid Position:
840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
86.6
0.82
0.8
81.1
30.9
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
50
-0.1
2.2
65.9
42.8

Associated Gene:

Gene:
ASPM
Ensembl Gene ID:
ENSAPLG00000007025
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007340
7133347 - 7160083
26737