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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7141574_7142104_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7141574 - 7142104
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCATATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTCCTTCATA
Flanking Amino Acid:
NPLWLRIGLETVYGELVPLE
Intron Amino Acid Position:
863

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
71.3
0.48
0.9
71.3
33
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
77
0.84
1.6
87.11
31.6

Associated Gene:

Gene:
ASPM
Ensembl Gene ID:
ENSAPLG00000007025
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007340
7133347 - 7160083
26737