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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7143159_7143258_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7143159 - 7143258
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGCGTTGA
5'SS Class:
weak_major
3'SS Sequence:
TTCCCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AGCTATTAAACT
Flanking Amino Acid:
AVDLQCGIRLVRAMELLTKD
Intron Amino Acid Position:
1012

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.2
55.1
40.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
85
0.79
0.6
84.3
23.6
Minor 5ss
35
-1.7
3.1
40.1
46
Minor BPS
50.3
0.09
1.8
67.74
43.1

Associated Gene:

Gene:
ASPM
Ensembl Gene ID:
ENSAPLG00000007025
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007340
7133347 - 7160083
26737