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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_714349_715381_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
714349 - 715381
Intron Length:
1033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TACCTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTATTTTAAACT
Flanking Amino Acid:
SMPDAVPITKTKKGVKRKAD
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
33.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80
0.68
0.8
73
37
Minor 5ss
43.6
-0.7
2.9
58.5
40.3
Minor BPS
61.9
0.45
1.6
76.8
39.9

Associated Gene:

Gene:
BRDT
Ensembl Gene ID:
ENSAPLG00000014456
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015077
705153 - 730839
25687