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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7144556_7145440_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7144556 - 7145440
Intron Length:
885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTAAACA
Flanking Amino Acid:
NAVCGFYNIKVENFTVCFSD
Intron Amino Acid Position:
1163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.4
0.62
1
74.4
39.1
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
64.9
0.46
1.8
80.03
36.1

Associated Gene:

Gene:
ASPM
Ensembl Gene ID:
ENSAPLG00000007025
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007340
7133347 - 7160083
26737