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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7145652_7145737_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7145652 - 7145737
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTGCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
CCAATCTGATCT
Flanking Amino Acid:
LNVMEGTFDQTSVMYKELLD
Intron Amino Acid Position:
1233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
67.3
0.39
1.1
69.7
34.5
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
45.9
-0.2
1.7
57.8
44.8

Associated Gene:

Gene:
ASPM
Ensembl Gene ID:
ENSAPLG00000007025
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007340
7133347 - 7160083
26737