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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7145875_7145961_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7145875 - 7145961
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TAGTCCTTAACT
Flanking Amino Acid:
DMSNTIPDEKVVITYLSFLC
Intron Amino Acid Position:
1279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
73.8
33
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
66.2
0.37
1
63
42.3
Minor 5ss
31.8
-2.1
3
37.5
47.2
Minor BPS
88.1
1.27
1
93.48
34.4

Associated Gene:

Gene:
ASPM
Ensembl Gene ID:
ENSAPLG00000007025
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007340
7133347 - 7160083
26737