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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7146091_7147473_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7146091 - 7147473
Intron Length:
1383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCTTT
5'SS Class:
major
3'SS Sequence:
TGACTCTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAC
U12 Branch Point Sequence:
GCAATCCTAACT
Flanking Amino Acid:
RLKKELKLSQERDRAARIIQ
Intron Amino Acid Position:
1322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
71.8
40.6
Major BPS
69.9
0.49
0.9
61.1
36.4
Major PPT
75.1
0.56
0.9
69.8
36.4
Minor 5ss
48.8
-0.1
3.1
73.8
42.7
Minor BPS
51.9
0.14
1.7
66.98
43.1

Associated Gene:

Gene:
ASPM
Ensembl Gene ID:
ENSAPLG00000007025
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007340
7133347 - 7160083
26737