About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7156538_7156964_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7156538 - 7156964
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
GCTTTATGAAAT
Flanking Amino Acid:
KFANGIIKFQALWRGYSWRK
Intron Amino Acid Position:
2996

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
81.2
30.6
Major BPS
75.5
0.63
1
66
40.9
Major PPT
83.8
0.76
0.7
79.9
25.8
Minor 5ss
36.4
-1.5
2.8
46.5
41.8
Minor BPS
49
0
1.8
68.03
42.1

Associated Gene:

Gene:
ASPM
Ensembl Gene ID:
ENSAPLG00000007025
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007340
7133347 - 7160083
26737