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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7157158_7157308_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7157158 - 7157308
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTATGTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCTTATTTAAAT
Flanking Amino Acid:
SYVLAALKHLEVVTRLSPLC
Intron Amino Acid Position:
3060

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.2
85.2
32.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77.6
0.62
0.9
72.4
37.5
Minor 5ss
34
-1.8
3.3
49.7
46.6
Minor BPS
67.1
0.62
1.6
82.06
39.2

Associated Gene:

Gene:
ASPM
Ensembl Gene ID:
ENSAPLG00000007025
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007340
7133347 - 7160083
26737