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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7157464_7158312_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7157464 - 7158312
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTACAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAA
U12 Branch Point Sequence:
CTTTCTTTTACA
Flanking Amino Acid:
SIQVLLNVSKYERTTQAVYE
Intron Amino Acid Position:
3112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
77.6
33
Major BPS
62.3
0.31
1
59.3
37.5
Major PPT
78.2
0.64
0.9
74.6
33.7
Minor 5ss
40.4
-1.1
3.3
55.8
48.3
Minor BPS
70.8
0.65
1.6
78.96
37.6

Associated Gene:

Gene:
ASPM
Ensembl Gene ID:
ENSAPLG00000007025
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007340
7133347 - 7160083
26737