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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7175566_7176717_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7175566 - 7176717
Intron Length:
1152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTTACTTTATTT
Flanking Amino Acid:
GWSNDIPHCEVAKCLPVKAP
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.8
35.6
Major BPS
75.1
0.62
1
65.6
41
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
31.4
-2.1
3.2
40.8
45.4
Minor BPS
67.5
0.63
1.6
84.37
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019231
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047333
7174270 - 7183992
9723